ncm_fit_esmcmc_new ()

NcmFitESMCMC *
ncm_fit_esmcmc_new (NcmFit *fit,
                    guint nwalkers,
                    NcmMSetTransKern *sampler,
                    NcmFitESMCMCWalker *walker,
                    NcmFitRunMsgs mtype);

Creates a new NcmFitESMCMC object using the given parameters.

ncm_fit_esmcmc_new_funcs_array ()

NcmFitESMCMC *
ncm_fit_esmcmc_new_funcs_array (NcmFit *fit,
                                guint nwalkers,
                                NcmMSetTransKern *sampler,
                                NcmFitESMCMCWalker *walker,
                                NcmFitRunMsgs mtype,
                                NcmObjArray *funcs_array);

Creates a new NcmFitESMCMC object using the given parameters. The funcs_array is used to compute extra columns in the catalog. The functions must be scalar and constant.

ncm_fit_esmcmc_ref ()

NcmFitESMCMC *
ncm_fit_esmcmc_ref (NcmFitESMCMC *esmcmc);

Increases the reference count of esmcmc by one.

ncm_fit_esmcmc_free ()

void
ncm_fit_esmcmc_free (NcmFitESMCMC *esmcmc);

Decreases the reference count of esmcmc by one. If the reference count reaches zero, all memory allocated by the object is released.

ncm_fit_esmcmc_clear ()

void
ncm_fit_esmcmc_clear (NcmFitESMCMC **esmcmc);

Decreases the reference count of esmcmc by one. If the reference count reaches zero, all memory allocated by the object is released. The esmcmc pointer is set to NULL.

ncm_fit_esmcmc_set_data_file ()

void
ncm_fit_esmcmc_set_data_file (NcmFitESMCMC *esmcmc,
                              const gchar *filename);

Sets the data file to use for the chains catalog.

ncm_fit_esmcmc_set_sampler ()

void
ncm_fit_esmcmc_set_sampler (NcmFitESMCMC *esmcmc,
                            NcmMSetTransKern *sampler);

ncm_fit_esmcmc_set_mtype ()

void
ncm_fit_esmcmc_set_mtype (NcmFitESMCMC *esmcmc,
                          NcmFitRunMsgs mtype);

Sets the type of messages to use when running.

ncm_fit_esmcmc_set_nthreads ()

void
ncm_fit_esmcmc_set_nthreads (NcmFitESMCMC *esmcmc,
                             guint nthreads);

If nthreads is larger than nwalkers / 2, it will be set to nwalkers / 2.

ncm_fit_esmcmc_use_mpi ()

void
ncm_fit_esmcmc_use_mpi (NcmFitESMCMC *esmcmc,
                        gboolean use_mpi);

If use_mpi is TRUE then the parallelization will be accomplished using MPI if any slaves are available. If no slaves are available then it falls back to threads.

Note that parallelization will only occur if the number of threads set using ncm_fit_esmcmc_set_nthreads() is larger than one.

ncm_fit_esmcmc_set_rng ()

void
ncm_fit_esmcmc_set_rng (NcmFitESMCMC *esmcmc,
                        NcmRNG *rng);

Sets the random number generator to use.

ncm_fit_esmcmc_set_auto_trim ()

void
ncm_fit_esmcmc_set_auto_trim (NcmFitESMCMC *esmcmc,
                              gboolean enable);

If enable is TRUE turns on the auto-trimming when performing a run_lre.

ncm_fit_esmcmc_set_auto_trim_div ()

void
ncm_fit_esmcmc_set_auto_trim_div (NcmFitESMCMC *esmcmc,
                                  guint div);

Sets the divisor for the auto trim tests.

ncm_fit_esmcmc_set_auto_trim_type ()

void
ncm_fit_esmcmc_set_auto_trim_type (NcmFitESMCMC *esmcmc,
                                   NcmMSetCatalogTrimType ttype);

Sets the trim type.

ncm_fit_esmcmc_set_min_runs ()

void
ncm_fit_esmcmc_set_min_runs (NcmFitESMCMC *esmcmc,
                             guint min_runs);

Sets the minimum number of runs between tests.

ncm_fit_esmcmc_set_max_runs_time ()

void
ncm_fit_esmcmc_set_max_runs_time (NcmFitESMCMC *esmcmc,
                                  gdouble max_runs_time);

Sets the maximum time for the runs between tests.

ncm_fit_esmcmc_has_rng ()

gboolean
ncm_fit_esmcmc_has_rng (NcmFitESMCMC *esmcmc);

ncm_fit_esmcmc_get_accept_ratio ()

gdouble
ncm_fit_esmcmc_get_accept_ratio (NcmFitESMCMC *esmcmc);

The acceptance ratio is the ratio of accepted proposals over the total number of proposals.

ncm_fit_esmcmc_get_offboard_ratio ()

gdouble
ncm_fit_esmcmc_get_offboard_ratio (NcmFitESMCMC *esmcmc);

The offboard ratio is the ratio of offboard proposals over the total number of proposals.

ncm_fit_esmcmc_get_accept_ratio_last_update ()

gdouble
ncm_fit_esmcmc_get_accept_ratio_last_update
                               (NcmFitESMCMC *esmcmc);

The acceptance ratio is the ratio of accepted proposals over the total number of proposals during the last update.

ncm_fit_esmcmc_get_offboard_ratio_last_update ()

gdouble
ncm_fit_esmcmc_get_offboard_ratio_last_update
                               (NcmFitESMCMC *esmcmc);

The offboard ratio is the ratio of offboard proposals over the total number of proposals during the last update.

ncm_fit_esmcmc_start_run ()

void
ncm_fit_esmcmc_start_run (NcmFitESMCMC *esmcmc);

Starts the run. This method should be called before any other run related method.

ncm_fit_esmcmc_end_run ()

void
ncm_fit_esmcmc_end_run (NcmFitESMCMC *esmcmc);

Terminates the run. This method should be called after all run related methods.

ncm_fit_esmcmc_reset ()

void
ncm_fit_esmcmc_reset (NcmFitESMCMC *esmcmc);

Resets the run.

ncm_fit_esmcmc_run ()

void
ncm_fit_esmcmc_run (NcmFitESMCMC *esmcmc,
                    guint n);

Runs the Monte Carlo until it reaches the n -th realization. Note that if the first_id is non-zero it will run n - first_id realizations.

ncm_fit_esmcmc_run_lre ()

void
ncm_fit_esmcmc_run_lre (NcmFitESMCMC *esmcmc,
                        guint prerun,
                        gdouble lre);

Runs the ESMCMC algorithm until the least relative error is less than lre . It runs at least prerun pre-runs before starting the algorithm.

ncm_fit_esmcmc_run_burnin ()

void
ncm_fit_esmcmc_run_burnin (NcmFitESMCMC *esmcmc,
                           guint prerun,
                           guint ntimes);

Runs the ESMCMC algorithm until the prerun -th iterations are reached. Then it runs ntimes times the estimated constant break.

The constant break is the number of iterations after which the variance of the m2lnL is constant.

ncm_fit_esmcmc_mean_covar ()

void
ncm_fit_esmcmc_mean_covar (NcmFitESMCMC *esmcmc);

Calculates the mean and covariance of the generated catalog.

ncm_fit_esmcmc_peek_ser ()

NcmSerialize *
ncm_fit_esmcmc_peek_ser (NcmFitESMCMC *esmcmc);

Peeks the internal NcmSerialize object from esmcmc .

ncm_fit_esmcmc_get_catalog ()

NcmMSetCatalog *
ncm_fit_esmcmc_get_catalog (NcmFitESMCMC *esmcmc);

Gets the generated catalog of esmcmc .

ncm_fit_esmcmc_peek_catalog ()

NcmMSetCatalog *
ncm_fit_esmcmc_peek_catalog (NcmFitESMCMC *esmcmc);

Gets the generated catalog of esmcmc .

ncm_fit_esmcmc_peek_fit ()

NcmFit *
ncm_fit_esmcmc_peek_fit (NcmFitESMCMC *esmcmc);

Gets the NcmFit object used by the sampler.

ncm_fit_esmcmc_validate ()

gboolean
ncm_fit_esmcmc_validate (NcmFitESMCMC *esmcmc,
                         gulong pi,
                         gulong pf);

Recalculates the value of $-2\ln(L)$ and compares with the values found in the catalog. This function is particularly useful to check if any problem occured during a multithread evaluation of the likelihood.

Choosing pf == 0 performs the validation from pi to the end.

ncm_fit_esmcmc_peek_walker ()

NcmFitESMCMCWalker *
ncm_fit_esmcmc_peek_walker (NcmFitESMCMC *esmcmc);

NCM_TYPE_FIT_ESMCMC

#define NCM_TYPE_FIT_ESMCMC (ncm_fit_esmcmc_get_type ())

NCM_FIT_ESMCMC_MIN_SYNC_INTERVAL

#define NCM_FIT_ESMCMC_MIN_SYNC_INTERVAL (10.0)

NCM_FIT_ESMCMC_M2LNL_ID

#define NCM_FIT_ESMCMC_M2LNL_ID (0)

NCM_FIT_ESMCMC_MPI_IN_LEN

#define NCM_FIT_ESMCMC_MPI_IN_LEN (3)

NCM_FIT_ESMCMC_MPI_OUT_LEN

#define NCM_FIT_ESMCMC_MPI_OUT_LEN (1)

NcmFitESMCMC

typedef struct _NcmFitESMCMC NcmFitESMCMC;

The “auto-trim” property

  “auto-trim”                gboolean

Whether to automatically trim the catalog.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Default value: FALSE

The “auto-trim-div” property

  “auto-trim-div”            guint

Automatically trim divisor.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Allowed values: >= 1

Default value: 100

The “data-file” property

  “data-file”                char *

Data filename.

Owner: NcmFitESMCMC

Flags: Read / Write

Default value: NULL

The “fit” property

  “fit”                      NcmFit *

Fit object.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct Only

The “function-array” property

  “function-array”           NcmObjArray *

Functions array.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct Only

The “intermediary-log” property

  “intermediary-log”         guint

Number of intermediary logs.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Allowed values: >= 1

Default value: 5

The “log-time-interval” property

  “log-time-interval”        double

Time interval between log.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Allowed values: >= 1

Default value: 60

The “lre-step” property

  “lre-step”                 double

Step size in the lre run.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Allowed values: [0.01,1]

Default value: 0.1

The “max-runs-time” property

  “max-runs-time”            double

Maximum time between runs.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Allowed values: >= 1

Default value: 7200

The “min-runs” property

  “min-runs”                 guint

Minumum number of runs.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Allowed values: >= 1

Default value: 10

The “mtype” property

  “mtype”                    NcmFitRunMsgs

Run messages type.

Owner: NcmFitESMCMC

Flags: Read / Write

Default value: NCM_FIT_RUN_MSGS_SIMPLE

The “nthreads” property

  “nthreads”                 guint

Number of threads to run.

Owner: NcmFitESMCMC

Flags: Read / Write

Default value: 0

The “nwalkers” property

  “nwalkers”                 guint

Number of walkers.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct Only

Allowed values: >= 1

Default value: 1

The “sampler” property

  “sampler”                  NcmMSetTransKern *

Initial points sampler.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

The “trim-type” property

  “trim-type”                NcmMSetCatalogTrimType

Trimming tests to apply.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Default value: NCM_MSET_CATALOG_TRIM_TYPE_ESS

The “use-mpi” property

  “use-mpi”                  gboolean

Use MPI instead of threads.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct

Default value: TRUE

The “walker” property

  “walker”                   NcmFitESMCMCWalker *

Walker object.

Owner: NcmFitESMCMC

Flags: Read / Write / Construct Only